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A
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B
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C
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D
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E
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F
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G
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L
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M
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N
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P
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
A
access_labels (mbuild.port.Port attribute)
add() (mbuild.compound.Compound method)
add_bond() (mbuild.compound.Compound method)
all_ports() (mbuild.compound.Compound method)
ancestors() (mbuild.compound.Compound method)
apply() (mbuild.pattern.Pattern method)
apply_to_compound() (mbuild.pattern.Pattern method)
available_ports() (mbuild.compound.Compound method)
B
bonds() (mbuild.compound.Compound method)
boundingbox (mbuild.compound.Compound attribute)
C
center (mbuild.compound.Compound attribute)
(mbuild.port.Port attribute)
Compound (class in mbuild.compound)
contains_rigid (mbuild.compound.Compound attribute)
D
direction (mbuild.port.Port attribute)
DiskPattern (class in mbuild.pattern)
E
energy_minimize() (mbuild.compound.Compound method)
F
fill_box() (in module mbuild.packing)
fill_region() (in module mbuild.packing)
fill_sphere() (in module mbuild.packing)
force_overlap() (in module mbuild.coordinate_transform)
from_parmed() (mbuild.compound.Compound method)
from_pybel() (mbuild.compound.Compound method)
from_trajectory() (mbuild.compound.Compound method)
G
generate_bonds() (mbuild.compound.Compound method)
get_populated_box() (mbuild.lattice.Lattice method)
get_smiles() (mbuild.compound.Compound method)
Grid2DPattern (class in mbuild.pattern)
Grid3DPattern (class in mbuild.pattern)
L
label_rigid_bodies() (mbuild.compound.Compound method)
Lattice (class in mbuild.lattice)
M
max_rigid_id (mbuild.compound.Compound attribute)
mbuild.formats.gsdwriter (module)
mbuild.formats.hoomdxml (module)
mbuild.formats.lammpsdata (module)
mbuild.packing (module)
mbuild.pattern (module)
min_periodic_distance() (mbuild.compound.Compound method)
Monolayer (class in mbuild.lib.recipes.monolayer)
N
n_bonds (mbuild.compound.Compound attribute)
n_particles (mbuild.compound.Compound attribute)
P
particles() (mbuild.compound.Compound method)
particles_by_name() (mbuild.compound.Compound method)
particles_in_range() (mbuild.compound.Compound method)
Pattern (class in mbuild.pattern)
Polymer (class in mbuild.lib.recipes.polymer)
populate() (mbuild.lattice.Lattice method)
Port (class in mbuild.port)
R
Random2DPattern (class in mbuild.pattern)
Random3DPattern (class in mbuild.pattern)
referenced_ports() (mbuild.compound.Compound method)
remove() (mbuild.compound.Compound method)
remove_bond() (mbuild.compound.Compound method)
rigid_particles() (mbuild.compound.Compound method)
root (mbuild.compound.Compound attribute)
rotate() (in module mbuild.coordinate_transform)
(mbuild.compound.Compound method)
S
save() (mbuild.compound.Compound method)
scale() (mbuild.pattern.Pattern method)
SilicaInterface (class in mbuild.lib.recipes.silica_interface)
solvate() (in module mbuild.packing)
SpherePattern (class in mbuild.pattern)
spin() (in module mbuild.coordinate_transform)
(mbuild.compound.Compound method)
successors() (mbuild.compound.Compound method)
T
TiledCompound (class in mbuild.lib.recipes.tiled_compound)
to_intermol() (mbuild.compound.Compound method)
to_networkx() (mbuild.compound.Compound method)
to_parmed() (mbuild.compound.Compound method)
to_pybel() (mbuild.compound.Compound method)
to_trajectory() (mbuild.compound.Compound method)
translate() (in module mbuild.coordinate_transform)
(mbuild.compound.Compound method)
translate_to() (in module mbuild.coordinate_transform)
(mbuild.compound.Compound method)
U
unlabel_rigid_bodies() (mbuild.compound.Compound method)
update_coordinates() (mbuild.compound.Compound method)
V
visualize() (mbuild.compound.Compound method)
W
write_gsd() (in module mbuild.formats.gsdwriter)
write_lammpsdata() (in module mbuild.formats.lammpsdata)
X
x_axis_transform() (in module mbuild.coordinate_transform)
xyz (mbuild.compound.Compound attribute)
xyz_with_ports (mbuild.compound.Compound attribute)
Y
y_axis_transform() (in module mbuild.coordinate_transform)
Z
z_axis_transform() (in module mbuild.coordinate_transform)
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